Publications

Marinotti O, Cerqueira GC, de Almeida LGP, Ferro MIT, Loreto EL, Zaha A, Teixeira SMR, Wespiser AR, Almeida e Silva A, Schlindwein AD, Pacheco ACL, Costa da Silva AL, Graveley BR, Walenz BP, Lima BA, Ribeiro CAG, Nunes-Silva CG, Carvalho CR, Soares CMA, Menezes CBA, Matiolli C, Caffrey D, Araújo DAM, Oliveira DM, Golenbock D, Grisard EC, Fantinatti-Garboggini F, Carvalho FM, Barcellos FG, Prosdocimi F, May G, Azevedo GM, Guimarães GM, Goldman GH, Padilha IQM, Batista JS, Ferro JA, Ribeiro JMC, Fietto JLR, Dabbas KM, Cerdeira L, Agnez-Lima LF, Brocchi M, Carvalho MO, Teixeira MM, Maia MMD, Goldman MH, Schneider MPC, Felipe MSS, Hungria M, Nicolás MF, Pereira M, Montes MA, Cantão ME, Vincentz M, Rafael MS, Silverman N, Stoco PH, Souza RC, Vicentini R, Gazzinelli RT, Neves RO, Silva R, Astolfi-Filho S, Maciel TEF, Ürményi TP, Tadei WP, Camargo EP, and Vasconcelos ATR (2013) The Genome of Anopheles darlingi, the main neotropical malaria vector. Nucleic Acids Research. first published online June 12.

Ortiz-Morea, FA; Vicentini, R.; Silva, GF.; Silva, EM.; Carrer, H.; Rodrigues, AP.; Nogueira, FTS. (2013) Global analysis of the sugarcane microtranscriptome reveals a unique composition of small RNAs associated with axillary bud outgrowth. Journal of Experimental Botany. 64(8): 2307-2320.

Silva, CC.; HayDEN, H.; Sawbridge, T.; Mele, P.; de Paula, SO.; Silva, LCF.; Vidigal, PMP.; Vicentini, R.; Souza, MP.; Torres, APR.; Santiago, VMJ., Oliveira, VM. (2013) Identification of Genes and Pathways Related to Phenol Degradation in Metagenomic Libraries from Petroleum Refinery Wastewater. Plos One, 8, e61811.

Cesarino, I; Araújo, P; Mayer, JLS; Vicentini, R.; Berthet, S; Demedts, B; Vanholme, B; Boerjan, W; Mazzafera, P (2013) Expression of SofLAC, a new laccase in sugarcane, restores lignin content but not S:G ratio of Arabidopsis lac17 mutant. Journal of Experimental Botany. 64(6): 1769-1781.

Vicentini, R.; Del Bem, LEV; Van Sluys, MA; Nogueira, FTS; Vincentz, M (2012) Gene content analysis of sugarcane public ESTs reveals thousands of missing coding-genes and an unexpected pool of grasses conserved ncRNAs. Tropical Plant Biology. 5(2): 199-205.

Domingues, DS; Cruz, GMQ; Metcalfe, CJ; Nogueira, FTS; Vicentini, R.; Alves, CS; Van Sluys, MA. (2012) Analysis of plant LTR-retrotransposons at the fine-scale family level reveals individual molecular patterns. BMC Genomics. 13: 137.

Ribeiro, DA.; Ferraz, LFC; Vicentini, R.; Ottoboni, LMM. (2012) Gene expression modulation by heat stress in Acidithiobacillus ferrooxidans LR. Antonie van Leeuwenhoek, 101, 583-593.

Ferraz, LFC; Verde, LCL; Vicentini, R.; Felício, AP; Ribeiro, ML; Alexandrino, F; Novo, MTM; Garcia, O; Rigden, DJ; Ottoboni, LMM. (2011) Ferric iron uptake genes are differentially expressed in the presence of copper sulfides in Acidithiobacillus ferrooxidans strain LR. Antonie van Leeuwenhoek , 99, 609-617.

Ossa, DMH; Oliveira, RR; Murakami, MT; Vicentini, R.; Costa-Filho, AJ; Alexandrino, F; Ottoboni, LMM; Garcia, O. (2011) Expression, purification and spectroscopic analysis of an HdrC: An iron sulfur cluster-containing protein from Acidithiobacillus ferrooxidans. Process Biochemistry, 46, 1335-1341.

Ribeiro, DA; Del Bem, LEV; Vicentini, R.; Ferraz, LFC; Murakami, MT; Ottoboni, LMM. (2011) The small heat shock proteins from Acidithiobacillus ferrooxidans: gene expression, phylogenetic analysis and structural modeling. BMC Microbiology, 11, 259.

Zanca, AS; Vicentini, R.; Ortiz-Morea, FA; Del Bem, lEV; Silva, MJ.; Vincentz, M.; Nogueira, FTS. (2010) Identification and expression analysis of microRNAs and targets in the biofuel crop sugarcane. BMC Plant Biology, 10: 260.

Costa, GL; Cardoso, KC; Del Bem, LEV; Lima, AC; Cunha, MAS; Campos-Leite, L; Vicentini, R; Papes, F; Moreira, RC; Yunes, JA; Campos, FAP; Da Silva, MJ. (2010) Transcriptome analysis of the oil-rich seed of the bioenergy crop Jatropha curcas L. BMC Genomics, 11, 462.

Reis, FC; Madureira, DJ; Vicentini, R.; Carlos, C; Ferraz, LFC; Garcia, O; Ottoboni, LMM. (2010) Transporter protein genes are differentially expressed in Acidithiobacillus ferrooxidans LR maintained in contact with covellite. World Journal of Microbiology & Biotechnology, 26, 2061-2068.

Vicentini, R.; Menossi, M. (2009) The predicted subcellular localisation of the sugarcane proteome. Functional Plant Biology, 36, 242-250.

Vicentini, R.; Felix, JM; Dornelas, MC; Menossi, M (2009) Characterization of a sugarcane (Saccharum spp.) gene homolog to the brassinosteroid insensitive1-associated receptor kinase 1 that is associated to sugar content. Plant Cell Reports, 28, 481-491.

Papini-Terzi, FS; Rocha, F; Vencio, R.; Felix, JM; Branco, D.; Waclawovsky, A; Del Bem, L; Lembke, C; Costa, M; Nishiyama, M; Vicentini, R.; Vincentz, M; Ulian, EC; Menossi, M; Souza, G (2009) Sugarcane genes associated with sucrose content. BMC Genomics; 10, 120.

Felix, J; Papini-Terzi, FS; Rocha, F; Vêncio, R; Vicentini, R.; Nishiyama, M; Ulian, EC; Souza, G; Menossi, M (2009) Expression Profile of Signal Transduction Components in a Sugarcane Population Segregating for Sugar Content. Tropical Plant Biology; 2, 98-109.

Knegt, F; Mello, L; Reis, F; Santos, M; Vicentini, R.; Ferraz, L; Ottoboni, L (2008) ribB and ribBA genes from Acidithiobacillus ferrooxidans: expression levels under different growth conditions and phylogenetic analysis. Research in Microbiology, 159, 423-431.

Corrêa, L; Riaño-Pachón, D; Schrago, C; Vicentini, R.; Mueller-Roeber, B; Vincentz, M; Shiu, S (2008) The Role of bZIP Transcription Factors in Green Plant Evolution: Adaptive Features Emerging from Four Founder Genes, PLoS one, 3, e2944.

Souza, A; Gaspar, M; da Silva, E; Ulian, E; Waclawosky, A; Nishiyama, M; Vicentini, R.; Menossi, M; Souza, G; Buckeridge, M (2008) Elevated CO increases photosynthesis, biomass and productivity, and modifies gene expression in sugarcane. Plant, Cell and Environment, 31, 1116-1127.

Carlos, C; Reis, F; Vicentini, R.; Madureira, D; Ottoboni, L. (2008) The rus Operon Genes Are Differentially Regulated When Acidithiobacillus ferrooxidans LR is Kept in Contact with Metal Sulfides. Current Microbiology, 57, 375-380.

Schlögl, P; Nogueira, F; Drummond, R; Felix, J; Rosa, V; Vicentini, R.; Leite, A; Ulian, E; Menossi, M. (2008) Identification of new ABA- and MEJA-activated sugarcane bZIP genes by data mining in the SUCEST database. Plant Cell Reports, 27, 335-345.

Vicentini, R.; Menossi, M. (2007) TISs-ST: a web server to evaluate polymorphic translation initiation sites and their reflections on the secretory targets. BMC Bioinformatics, 8, 160.

Vicentini, R.; Menossi, M. (2007) Pipeline for macro- and microarray analyses. Brazilian Journal of Medical and Biological Research, 40, 615-619.

Rocha, F; Papini-Terzi, F; Nishiyama, M; Vencio, R; Vicentini, R.; Duarte, M; Vinagre, F; Ulian, E; Zingaretti, S; Almedia, R; Figueira, A; Hemerly, A; Silva-Filho, M; Menossi, M; Souza, G. (2007) Signal transduction-related responses to phytohormones and environmental challenges in sugarcane. BMC Genomics, 8, 71.

Papini-Terzi, R; Riso, F; Vencio, R; Oliveira, K; Felix, JM; Vicentini, R.; Rocha, C; Simoes, A; Ulian, E; Zingaretti, S; Silva, A; Pereira, C; Menossi, M; Souza, G. (2005) Transcription Profiling of Signal Transduction-Related Genes in Sugarcane Tissues. DNA Research, 12, 27-38.

Vicentini, R.; Sassaki, F; Gimenes, M; Maia, I; Menossi, M. (2005) In silico evaluation of the Eucalyptus transcriptome. Genetics and Molecular Biology, 28, 487-495.

Nogueira, E; Vinagre, F; Masuda, H; Vargas, C; de Pauda, V; da Silva, F; Vicentini, R.; Baldani, J; Ferreira, P; Hemerly, A. (2001) Expression of sugarcane genes induced by inoculation with Gluconacetobacter diazotrophicus and Herbaspirillum rubrisubalbicans. Genetics and Molecular Biology, 24, 199-206.

Figueiredo, R; Brito, M; Figueiredo, L; Quiapin, A; Vitorelli, P; Silva, L; Vicentini, R.; Molfetta, J; Goldman, G; Goldman, M. (2001) Dissecting the sugarcane expressed sequence tag (SUCEST) database: unraveling flower-specific genes. Genetics and Molecular Biology, 24, 77-84.